Alain DENISE Professeur
Université Paris-Sud / Paris-Saclay
LRI and I2BC
91405 Orsay Cedex
Alain.Denise@u-psud.fr
Software
Research
Publications
Teaching
Research
My main research interest is Bioinformatics and Computational Biology, notably:
RNA structural bioinformatics
More generally, algorithmics and combinatorics of genomic sequences and structures.
I work in two labs at University Paris-Sud 11 and CNRS:
LRI
(
Bioinformatics group
) and
I2BC
(
Molecular Bioinformatics group
).
Publications
in Google Scholar
in DBLP
in PubMed
in HAL
in ResearchGate
Software
VARNA: Visualisation Applet for RNA.
GenRGenS: Generation of Random Genomic Sequences and Structures.
Cartaj: Classification Of RNA threeway Junctions.
NestedAlign: Pairwise RNA secondary structure comparison.
Rna3Dmotif: Extracting (local) RNA tertiary motifs in RNA structures.
CaRNAval: Extracting Recurrent Interaction Networks (RINs) in RNA structures.
GARN: RNA 3D sampling with game algorithms.
Teaching
I teach mainly at the
Computer Science department
and the Biology department at Paris-Sud University. Below are some (mainly old) resources.
Master of Bioinformatics and Biostatistics (Master de Bioinformatique et Biostatistique).
Some documents and references for the class of "RNomics and RNA Bioinformatics" 2014-2015.
Licence d'Informatique:
PIL (Principes d'Interprétation des Langages)
IUT d'Orsay :
Bioinformatique
et
Compilation
.