Cédric Saule's home page

Personnal informations

PhD student
LRI , Bâtiment 490
Université Paris-Sud
91405 ORSAY Cedex - FRANCE
Tel : +331 69.15.42.35.
email : saule@lri.fr

Research

Subject

My supervisor is Alain Denise . My thesis is composed of two parts:

Enumeration of RNA secondary structures with pseudoknots.

Random generation of realistic RNA secondary structures.

Publications

Saule C., Wallon C., Denise A. Uniform and non-uniform random generation of RNA secondary structures with pseudoknots (extended abstract). to appear in proceedings of GASCOM'10, Montréal, September 2010. Preprint (pdf).

Saule C., Régnier M., Steyaert J-M., Denise A. Counting RNA pseudoknotted structures. Journal of Computational Biology (to appear). Preprint (pdf).
Saule C., Régnier M., Steyaert J-M., Denise A. Counting RNA pseudoknotted structures. Poster. Discret Mathematics and Theorical Computer Sciences (DMTCS). San Francisco, 2010, Août, 904--915 pdf.
Saule C., Denise A. Counting RNA pseudoknotted structures. Poster, ISMB/ECCB, Stockholm, June 2009.
Allali J., d'AubentonCarafa Y., Chauve C., Denise A., Drevet C., Ferraro P., Gautheret D., Herrbach C., Leclerc F., de Monte A., Ouangraoua A., Sagot MF., Saule C., Termier M., Thermes C. and Touzet H.. Benchmarking RNA secondary structure comparison algorithms. Actes des Journées Ouvertes de biologie, Informatique et Mathématiques, Lille, p 6768 Juillet 2008.

Teaching

2009-2010
- Internet programming (xhtml, css, php)(20h).
- Software engineering (analysis, conception, UML, tests, proof) (33h).
- Java programming (25h)
- Students supervision.
2008-2009
- Software engineering (analysis, conception, UML, tests) (27h).
- Students supervision.
2007-2008
- Internet programming (xhtml, css, php)(40h).
- Software engineering (analysis, conception, UML) (33h).
- Advanced software engineering (object models) (22h).
- Students supervision.
2006-2007
- Introduction to computer science (Basic algorithms, C programming) (40h).
- Internet programming (46h).
- Students supervision.