/********************************************************************************** * A weighted grammar for the stem loops inside RNA * * Part of the frameshifting model beheaded by StemLoopFrameshiftMaster.ggd * **********************************************************************************/ TYPE = GRAMMAR RULES = S -> A S U ; S -> U S A ; S -> C S G ; S -> G S C ; S -> L ; L -> A' L; L -> C' L; L -> G' L; L -> U' L; L -> ; WEIGHTS = A' 0.4 C' 0.5 G' 0.5 U' 0.3 ALIASES = A' = A G' = G C' = C U' = U