Français Anglais
Accueil Annuaire Plan du site
Accueil > Production scientifique > Résultat majeur
Production scientifique
Résultat majeur : TREE DECOMPOSITION AND PARAMETERIZED ALGORITHMS FOR RNA STRUCTURE-SEQUENCE ALIGNMENT INCLUDING TERTIARY INTERACTIONS AND PSEUDOKNOTS
TREE DECOMPOSITION AND PARAMETERIZED ALGORITHMS FOR RNA STRUCTURE-SEQUENCE ALIGNMENT INCLUDING TERTIARY INTERACTIONS AND PSEUDOKNOTS
07 août 2012

Philippe Rinaudo, Yann Ponty, Dominique Barth, and Alain Denise. WABI 2012.
We present a general setting for structure-sequence comparison in a large class of RNA structures, that unifies and generalizes a number of recent works on specific families of structures. Our approach is based on a {em tree decomposition} of structures, and gives rise to a general parameterized algorithm having complexity in O(N m^t)$, where N (resp. m) is the structure (resp. sequence) length, and the exponent t depends on the family of structures. For each family considered by previous approaches, our contribution specializes into an algorithm whose complexity either matches or outperforms previous solutions.



Activités de recherche
  ° Algorithmique
  ° Bioinformatique

Equipe
  ° Bioinformatique

Contact
  ° DENISE Alain
Résultats majeurs
COMPUTER‐AIDED BIOCHEMICAL PROGRAMMING OF SYNTHETIC MICROREACTORS AS DIAGNOSTIC DEVICES
27 avril 2018
Alexis Courbet, Patrick Amar, Francois Fages, Eric Renard, Franck Molina Mol Syst Biol. (2018) 14:

BEST PAPER AWARD: SELF-STABILIZING DISTRIBUTED STABLE MARRIAGE
05 novembre 2017
SSS 2017, M. Laveau, G. Manoussakis, J. Beauquier, T. Bernard, J. Burman, J. Cohen, and L. Pilard

BEST PAPER AWARD INTELLI 2017: A MODEL OF PULSATION FOR EVOLUTIVE FORMALIZING INCOMPLETE INTELLIGENT SYSTEMS
27 juillet 2017
authors: Marta Franova, Yves Kodratoff

INFORMATION-GEOMETRIC OPTIMIZATION ALGORITHMS: A UNIFYING PICTURE VIA INVARIANCE PRINCIPLES
02 mai 2017
Yann Ollivier, Ludovic Arnold, Anne Auger, Nikolaus Hansen - JMLR 18(18):1−65, 2017.

FORMAL MUTATION TESTING FOR CIRCUS
21 avril 2016
Alex Donizeti Betez Alberto, Ana Cavalcanti, Marie-Claude Gaudel, Adenilso Simao Journal of Infor