mobirise.com

PUBLICATIONS

The complete list of my publications can also be found on my google scholar page (with some bibliometry information).

2017
[48] Scientific workflows for computational reproducibility in the life sciences: Status challenges and opportunities (Sarah Cohen-Boulakia Khalid Belhajjame Olivier Collin Jerome Chopard Christine Froidevaux Alban Gaignard Konrad Hinsen Pierre Larmande Yvan Le Bras Frederic Lemoine Fabien Mareuil Herve Menager Christophe Pradal Christophe Blanchet) In Future Generation Computer Systems, volume missing volume, 2017. [bib]
[47] InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid (Christophe Pradal, Simon Artzet, Jerome Chopard, Dimitri Dupuis, Christian Fournier, Michael Mielewczik, Vincent Negre, Pascal Neveu, Didier Parigot, Patrick Valduriez, Sarah Cohen-Boulakia) In Future Generation Computer Systems, volume missing volume, 2017. [bib]
2016
[46] Effective and Efficient Similarity Search in Scientific Workflow Repositories (Johannes Starlinger, Sarah Cohen-Boulakia, Sanjeev Khanna, Susan Davidson, Ulf Leser) In Future Generation Computer Systems, volume missing volume, 2016. [bib] [pdf]
2015
[45] OpenAlea: Scientific Workflows Combining Data Analysis and Simulation (Christophe Pradal, Christian Fournier, Patrick Valduriez, Sarah Cohen-Boulakia) In SSDBM 2015: 27th International Conference on Scientific and Statistical Database Management, 2015. [bib] [pdf] [doi]
[44] Interrogation et Gestion de donnees bioinformatiques pour la biologie moleculaire (Sarah Cohen-Boulakia, Patrick Valduriez) In Les Techniques de l'Ingenieur, volume missing volume, 2015. [bib] [pdf]
[43] Interrogation de bases de donnees biologiques publiques par reformulation de requetes et classement des resultats avec ConQuR-Bio (Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia), 2015. [bib] [pdf]
[42] Rank aggregation with ties: Experiments and Analysis (Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen-Boulakia Alain Denise, Sylvie Hamel) In Proceedings of the VLDB Endowment (PVLDB), volume missing volume, 2015. [bib] [pdf]
2014
[41] Layer Decomposition: An Effective Structure-based Approach for Scientific Workflow Similarity (Johannes Starlinger, Sarah Cohen-Boulakia, Sanjeev Khanna, Susan Davidson, Ulf Leser) In Proc. of the 10th IEEE International Conference in eScience, 2014. [bib]
[40] DistillFlow: Removing redundancy in Scientific Workflows (Jiuqiang Chen, Sarah Cohen-Boulakia, Christine Froidevaux, Carole Goble, Paolo Missier, Alan Williams) In Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM), 2014. [bib] [pdf]
[39] ConQuR-Bio: Consensus ranking with Query Reformulation for Biological data (Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia) In DILS 2014 Tenth International Workshop in Data Integration in the Life Sciences, 2014. [bib] [pdf]
[38] Similarity Search for Scientific Workflows (Johannes Starlinger, Bryan Brancotte, Sarah Cohen-Boulakia, Ulf Leser) In Proceedings of the VLDB Endowment (PVLDB), volume missing volume, 2014. [bib] [pdf]
[37] Distilling Structure in Taverna Scientific Workflows: A refactoring approach. (Sarah Cohen-Boulakia, Jiuqiang Chen, Carole Goble, Paolo Missier, Alan Williams, Christine Froidevaux) In BMC Bioinformatics, volume 15, 2014. [bib]
2012
[36] (Re)Use in Public Scientific Workflow Repositories. (Johannes Starlinger, Sarah Cohen-Boulakia, Ulf Leser) In Proc. of the 22nd Int. Conf. in Scientific and Statistical Database Management (SSDBM), 2012. [bib]
[35] Scientific Workflow Rewriting while Preserving Provenance (Sarah Cohen-Boulakia, Christine Froidevaux, Jiuqiang Chen) In Proc. of the 8th IEEE International Conference in eScience, 2012. [bib]
[34] Reecriture de workflows scientifiques et provenance (Sarah Cohen-Boulakia, Christine Froidevaux, Jiuqiang Chen) In Proc. of the 28th Journees de Bases de Donnees Avancees, 2012. [bib]
[33] Distilling scientific workflow structure (Sarah Cohen-Boulakia, Christine Froidevaux, Carole Goble, Alan Williams, Jiuqiang Chen) In EMBnet Journal Proc. of the 12th International Workshop on Network Tools and Applications in Biology Nettab 2012 (poster), volume 18, 2012. [bib]
2011
[32] Search Adapt and Reuse: The Future of Scientific Workflows. (Sarah Cohen-Boulakia, Ulf Leser) In SIGMOD Records, volume 40, 2011. [bib]
[31] Gene List significance at-a-glance with GeneValorization. (Bryan Brancotte, Anne Biton, Isabelle Bernard-Pierrot, Francois Radvanyi, Fabien Reyal, Sarah Cohen-Boulakia) In Bioinformatics, volume 27, 2011. [bib]
[30] Next generation data integration for Life Sciences (Sarah Cohen-Boulakia, Ulf Leser) In Proc. of the 25th Int. Conf. on Data Engineering (ICDE) IEEE, 2011. [bib]
[29] Using medians to generate consensus rankings for biological data (Sarah Cohen-Boulakia, Alain Denise, Sylvie Hamel) In Proc. SSDBM: Scientific and Statistical Database Management Conference, 2011. [bib]
2010
[28] Privacy Issues in Scientific Workflow Provenance (Susan Davidson Sanjeev Khanna Sudeepa Roy, Sarah Cohen-Boulakia) In Proc. of the 1st Int. Workshop on Workflow Approaches to New Data-centric Science (SIGMOD Workshop), 2010. [bib]
2009
[27] Biological Resource Discovery (Zoe Lacroix, Cartik R. Kothari, Peter Mork, Rami Rifaieh, Mark Wilkinson, Juliana Freire, Sarah Cohen-Boulakia) In Encyclopedia of Database Systems, 2009. [bib]
[26] Provenance in Scientific Databases (Sarah Cohen-Boulakia, Wang Chiew Tan) In Encyclopedia of Database Systems, 2009. [bib]
[25] Biological Metadata Management (Zoe Lacroix, Cartik R. Kothari, Peter Mork, Mark Wilkinson, Sarah Cohen-Boulakia) In Encyclopedia of Database Systems, 2009. [bib]
[24] Differencing Provenance in Scientific Workflows (Zhuowei Bao, Sarah Cohen-Boulakia, Susan Davidson, Anat Eyal, Sanjeev Khanna) In Proc. of the 25th Int. Conf. on Data Engineering (ICDE) IEEE, 2009. [bib]
[23] PDiffView: Viewing the Difference in Provenance of Workflow Results (Zhuowei Bao, Sarah Cohen-Boulakia, Susan Davidson, Pierrick Girard) In PVLDB Proc. of the 35th Int. Conf. on Very Large Data Bases, volume 2, 2009. [bib]
[22] BioBrowsing: Making the Most of the Data Available in Entrez (Sarah Cohen-Boulakia, Kevin Masini) In 21st Int. Conf. in Scientific and Statistical Database Management (SSDBM) LNCS 5566 Springer, 2009. [bib]
[21] On User Views in Scientific Workflow Systems (Invited Paper) (Susan Davidson, Yi Chen, Peng Sun, Sarah Cohen-Boulakia) In Proc. of the the First Int. Workshop on the role of Semantic Web in Provenance Management (ISWC 2009 Workshop), 2009. [bib]
2008
[20] Addressing the Provenance Challenge using ZOOM (Sarah Cohen-Boulakia, Olivier Biton, Shirley Cohen, Susan B. Davidson) In Concurrency and Computation: Practice and Experience, volume Vol 20, 2008. [bib]
[19] Special Issue: The First Provenance Challenge (Luc Moreau, Bertram Lud\ascher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen-Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul T. Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Claudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao) In Concurrency and Computation: Practice and Experience, volume 20, 2008. [bib]
[18] Data Integration in the Life Sciences 5th International Workshop DILS 2008 Evry France June 25-27 2008. Proceedings (Amos Bairoch, Sarah Cohen-Boulakia, Christine Froidevaux), 2008. [bib]
[17] Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008 (Amos Bairoch, Sarah Cohen-Boulakia, Christine Froidevaux) In BMC Bioinformatics, volume 9, 2008. [bib]
[16] Querying and Managing Provenance through User Views in Scientific Workflows (Olivier Biton, Sarah Cohen-Boulakia, Susan B. Davidson, Carmem S. Hara) In Proceedings of the 24th International Conference on Data Engineering ICDE 2008, 2008. [bib]
2007
[15] Provenance in Scientific Workflow Systems (Susan B. Davidson, Sarah Cohen-Boulakia, Anat Eyal, Bertram Lud\ascher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire) In IEEE Data Eng. Bull., volume 30, 2007. [bib]
[14] Data Integration in the Life Sciences 4th International Workshop DILS 2007 Philadelphia PA USA June 27-29 2007 Proceedings (Sarah Cohen-Boulakia, Val Tannen), 2007. [bib]
[13] Zoom*UserViews: Querying Relevant Provenance in Workflow Systems (Olivier Biton, Sarah Cohen-Boulakia, Susan B. Davidson) In VLDB 2007 Proc. of the International Conference on Very Large Data Bases, 2007. [bib]
[12] BioGuideSRS: querying multiple sources with a user-centric perspective (Sarah Cohen-Boulakia, Olivier Biton, Susan B. Davidson, Christine Froidevaux) In Bioinformatics, volume 23, 2007. [bib]
2006
[11] Towards a Model of Provenance and User Views in Scientific Workflows (Shirley Cohen, Sarah Cohen-Boulakia, Susan B. Davidson) In DILS 2006 Third International Workshop in Data Integration in the Life Sciences, 2006. [bib]
[10] Selecting Biological Data Sources and Tools with XPR a Path Language for RDF (Sarah Cohen-Boulakia, Christine Froidevaux, Emmanuel Pietriga) In PSB 2006 Pacific Symposium on Biocomputing, 2006. [bib]
[9] Path-based Systems to Guide Scientists in the Maze of Biological Data Sources (Sarah Cohen-Boulakia, Susan B. Davidson, Christine Froidevaux, Zoe Lacroix, Maria-Esther Vidal) In J. Bioinformatics and Computational Biology, volume 4, 2006. [bib]
[8] Proteome informatics II. Bioinformatics for comparative proteomics (Frederique Lisacek, Sarah Cohen-Boulakia, Ron D. Appel) In ICDE 2008 Proc. of the International Conference on Data Engineering, 2006. [bib] [pdf]
2005
[7] A User-centric Framework for Accessing Biological Sources and Tools (Sarah Cohen-Boulakia, Susan B. Davidson, Christine Froidevaux) In DILS'05 Data Integration in the Life Sciences Lecture Notes in Computer Science (LNCS) series LNBI, 2005. [bib]
2004
[6] WInGS:A reliability controlled data warehouse for yeast (David Abergel, Sarah Cohen-Boulakia, Frederic Lemoine, Christine Froidevaux, Michel Termier) In In Proc. of JOBIM'2004 Journees Ouvertes Biologie Informatique et Mathematiques, 2004. [bib]
[5] Selecting biomedical data sources according to user preferences (Sarah Cohen-Boulakia, Severine Lair, Nicolas Stransky, Stephane Graziani, François Radvanyi, Emmanuel Barillot, Christine Froidevaux) In Bioinformatics, volume Vol 20 Suppl. 1, 2004. [bib] [pdf]
[4] Interrogation de sources biomedicales : gestion des preferences de l'utilisateur (Sarah Cohen-Boulakia, Christine Froidevaux, Severine Lair) In Proc. of EGC'2004 Extraction et Gestion des Connaissances, 2004. [bib] [pdf]
[3] Preferences for Queries in a Mediator Approach (Alain Bidault, Sarah Cohen-Boulakia, Christine Froidevaux) In In Proc. of ECAI'2004 European Conference on Artificial Intelligence, 2004. [bib] [pdf]
2002
[2] Integration de Sources de Donnees Genomiques du Web (Christine Froidevaux, Sarah Cohen-Boulakia) In Journees scientifiques du Web Semantique (actes electroniques), 2002. [bib] [pdf]
[1] Genopage : A database of all protein modules encoded by completely sequenced genomes (Sarah Cohen-Boulakia, Christine Froidevaux, Emmanuel Waller, Bernard Labedan) In Proc. of JOBIM 2002 Journees Ouvertes Biologie Informatique et Mathematiques, 2002. [bib] [pdf]