IEEE VIS Publication Dataset

The study of physical phenomena and their dynamic evolution is supported by the analysis and visualization of time-enabled data. In many applications, available data are sparsely distributed in the space-time domain, which leads to incomprehensible visualizations. We present an interactive approach for the dynamic tracking and visualization of measured data particles through advection in a simulated flow. We introduce a fully GPU-based technique for efficient spatio-temporal interpolation, using a kd-tree forest for acceleration. As the user interacts with the system using a time slider, particle positions are reconstructed for the time selected by the user. Our results show that the proposed technique achieves highly accurate parallel tracking for thousands of particles. The rendering performance is mainly affected by the size of the query set.

Today molecular simulations produce complex data sets capturing the interactions of molecules in detail. Due to the complexity of this time-varying data, advanced visualization techniques are required to support its visual analysis. Current molecular visualization techniques utilize ambient occlusion as a global illumination approximation to improve spatial comprehension. Besides these shadow-like effects, interreflections are also known to improve the spatial comprehension of complex geometric structures. Unfortunately, the inherent computational complexity of interreflections would forbid interactive exploration, which is mandatory in many scenarios dealing with static and time-varying data. In this paper, we introduce a novel analytic approach for capturing interreflections of molecular structures in real-time. By exploiting the knowledge of the underlying space filling representations, we are able to reduce the required parameters and can thus apply symbolic regression to obtain an analytic expression for interreflections. We show how to obtain the data required for the symbolic regression analysis, and how to exploit our analytic solution to enhance interactive molecular visualizations.

B-mode ultrasound is a very well established imaging modality and is widely used in many of today's clinical routines. However, acquiring good images and interpreting them correctly is a challenging task due to the complex ultrasound image formation process depending on a large number of parameters. To facilitate ultrasound acquisitions, we introduce a novel framework for real-time uncertainty visualization in B-mode images. We compute real-time per-pixel ultrasound Confidence Maps, which we fuse with the original ultrasound image in order to provide the user with an interactive feedback on the quality and credibility of the image. In addition to a standard color overlay mode, primarily intended for educational purposes, we propose two perceptional visualization schemes to be used in clinical practice. Our mapping of uncertainty to chroma uses the perceptionally uniform L*a*b* color space to ensure that the perceived brightness of B-mode ultrasound remains the same. The alternative mapping of uncertainty to fuzziness keeps the B-mode image in its original grayscale domain and locally blurs or sharpens the image based on the uncertainty distribution. An elaborate evaluation of our system and user studies on both medical students and expert sonographers demonstrate the usefulness of our proposed technique. In particular for ultrasound novices, such as medical students, our technique yields powerful visual cues to evaluate the image quality and thereby learn the ultrasound image formation process. Furthermore, seeing the distribution of uncertainty adjust to the transducer positioning in real-time, provides also expert clinicians with a strong visual feedback on their actions. This helps them to optimize the acoustic window and can improve the general clinical value of ultrasound.

Animal development is marked by the repeated reorganization of cells and cell populations, which ultimately determine form and shape of the growing organism. One of the central questions in developmental biology is to understand precisely how cells reorganize, as well as how and to what extent this reorganization is coordinated. While modern microscopes can record video data for every cell during animal development in 3D+t, analyzing these videos remains a major challenge: reconstruction of comprehensive cell tracks turned out to be very demanding especially with decreasing data quality and increasing cell densities. In this paper, we present an analysis pipeline for coordinated cellular motions in developing embryos based on the optical flow of a series of 3D images. We use numerical integration to reconstruct cellular long-term motions in the optical flow of the video, we take care of data validation, and we derive a LIC-based, dense flow visualization for the resulting pathlines. This approach allows us to handle low video quality such as noisy data or poorly separated cells, and it allows the biologists to get a comprehensive understanding of their data by capturing dynamic growth processes in stills. We validate our methods using three videos of growing fruit fly embryos.

We propose a new class of vortex definitions for flows that are induced by rotating mechanical parts, such as stirring devices, helicopters, hydrocyclones, centrifugal pumps, or ventilators. Instead of a Galilean invariance, we enforce a rotation invariance, i.e., the invariance of a vortex under a uniform-speed rotation of the underlying coordinate system around a fixed axis. We provide a general approach to transform a Galilean invariant vortex concept to a rotation invariant one by simply adding a closed form matrix to the Jacobian. In particular, we present rotation invariant versions of the well-known Sujudi-Haimes, Lambda-2, and Q vortex criteria. We apply them to a number of artificial and real rotating flows, showing that for these cases rotation invariant vortices give better results than their Galilean invariant counterparts.

We present a new method to visualize from an ensemble of flow fields the statistical properties of streamlines passing through a selected location. We use principal component analysis to transform the set of streamlines into a low-dimensional Euclidean space. In this space the streamlines are clustered into major trends, and each cluster is in turn approximated by a multivariate Gaussian distribution. This yields a probabilistic mixture model for the streamline distribution, from which confidence regions can be derived in which the streamlines are most likely to reside. This is achieved by transforming the Gaussian random distributions from the low-dimensional Euclidean space into a streamline distribution that follows the statistical model, and by visualizing confidence regions in this distribution via iso-contours. We further make use of the principal component representation to introduce a new concept of streamline-median, based on existing median concepts in multidimensional Euclidean spaces. We demonstrate the potential of our method in a number of real-world examples, and we compare our results to alternative clustering approaches for particle trajectories as well as curve boxplots.

Understanding co-occurrence in urban human mobility (i.e. people from two regions visit an urban place during the same time span) is of great value in a variety of applications, such as urban planning, business intelligence, social behavior analysis, as well as containing contagious diseases. In recent years, the widespread use of mobile phones brings an unprecedented opportunity to capture large-scale and fine-grained data to study co-occurrence in human mobility. However, due to the lack of systematic and efficient methods, it is challenging for analysts to carry out in-depth analyses and extract valuable information. In this paper, we present TelCoVis, an interactive visual analytics system, which helps analysts leverage their domain knowledge to gain insight into the co-occurrence in urban human mobility based on telco data. Our system integrates visualization techniques with new designs and combines them in a novel way to enhance analysts' perception for a comprehensive exploration. In addition, we propose to study the correlations in co-occurrence (i.e. people from multiple regions visit different places during the same time span) by means of biclustering techniques that allow analysts to better explore coordinated relationships among different regions and identify interesting patterns. The case studies based on a real-world dataset and interviews with domain experts have demonstrated the effectiveness of our system in gaining insights into co-occurrence and facilitating various analytical tasks.

Species distribution models (SDM) are used to help understand what drives the distribution of various plant and animal species. These models are typically high dimensional scalar functions, where the dimensions of the domain correspond to predictor variables of the model algorithm. Understanding and exploring the differences between models help ecologists understand areas where their data or understanding of the system is incomplete and will help guide further investigation in these regions. These differences can also indicate an important source of model to model uncertainty. However, it is cumbersome and often impractical to perform this analysis using existing tools, which allows for manual exploration of the models usually as 1-dimensional curves. In this paper, we propose a topology-based framework to help ecologists explore the differences in various SDMs directly in the high dimensional domain. In order to accomplish this, we introduce the concept of maximum topology matching that computes a locality-aware correspondence between similar extrema of two scalar functions. The matching is then used to compute the similarity between two functions. We also design a visualization interface that allows ecologists to explore SDMs using their topological features and to study the differences between pairs of models found using maximum topological matching. We demonstrate the utility of the proposed framework through several use cases using different data sets and report the feedback obtained from ecologists.

We propose a system to analyze and contextualize simulations of coronal mass ejections. As current simulation techniques require manual input, uncertainty is introduced into the simulation pipeline leading to inaccurate predictions that can be mitigated through ensemble simulations. We provide the space weather analyst with a multi-view system providing visualizations to: 1. compare ensemble members against ground truth measurements, 2. inspect time-dependent information derived from optical flow analysis of satellite images, and 3. combine satellite images with a volumetric rendering of the simulations. This three-tier workflow provides experts with tools to discover correlations between errors in predictions and simulation parameters, thus increasing knowledge about the evolution and propagation of coronal mass ejections that pose a danger to Earth and interplanetary travel.

Identification of early signs of rotating stall is essential for the study of turbine engine stability. With recent advancements of high performance computing, high-resolution unsteady flow fields allow in depth exploration of rotating stall and its possible causes. Performing stall analysis, however, involves significant effort to process large amounts of simulation data, especially when investigating abnormalities across many time steps. In order to assist scientists during the exploration process, we present a visual analytics framework to identify suspected spatiotemporal regions through a comparative visualization so that scientists are able to focus on relevant data in more detail. To achieve this, we propose efficient stall analysis algorithms derived from domain knowledge and convey the analysis results through juxtaposed interactive plots. Using our integrated visualization system, scientists can visually investigate the detected regions for potential stall initiation and further explore these regions to enhance the understanding of this phenomenon. Positive feedback from scientists demonstrate the efficacy of our system in analyzing rotating stall.

We present Visualization-by-Sketching, a direct-manipulation user interface for designing new data visualizations. The goals are twofold: First, make the process of creating real, animated, data-driven visualizations of complex information more accessible to artists, graphic designers, and other visual experts with traditional, non-technical training. Second, support and enhance the role of human creativity in visualization design, enabling visual experimentation and workflows similar to what is possible with traditional artistic media. The approach is to conceive of visualization design as a combination of processes that are already closely linked with visual creativity: sketching, digital painting, image editing, and reacting to exemplars. Rather than studying and tweaking low-level algorithms and their parameters, designers create new visualizations by painting directly on top of a digital data canvas, sketching data glyphs, and arranging and blending together multiple layers of animated 2D graphics. This requires new algorithms and techniques to interpret painterly user input relative to data ΓÇ£underΓÇ¥ the canvas, balance artistic freedom with the need to produce accurate data visualizations, and interactively explore large (e.g., terabyte-sized) multivariate datasets. Results demonstrate a variety of multivariate data visualization techniques can be rapidly recreated using the interface. More importantly, results and feedback from artists support the potential for interfaces in this style to attract new, creative users to the challenging task of designing more effective data visualizations and to help these users stay ΓÇ£in the creative zoneΓÇ¥ as they work.

Studies have found conflicting results regarding the effectiveness of tube-like structures for representing 3D flow data. This paper presents the findings of a small-scale pilot study contrasting static monoscopic depth cues to ascertain their importance in perceiving the orientation of a three-dimensional glyph with respect to a cutting plane. A simple striped texture and shading were found to reduce judgement errors when used with a 3D tube glyph as compared to plain or shaded line glyphs. A discussion of considerations for a full-scale study and possible future work follows.

Diffusion weighted magnetic resonance imaging (dMRI) together with tractography algorithms allow to probe for principal white matter tracts in the living human brain. Specifically, probabilistic tractography quantifies the existence of physical connections to a given seed region as a 3D scalar map of confidence scores. Fiber-Stippling is a visualization for probabilistic tracts that effectively communicates the diffusion pattern, connectivity score, and anatomical context. Unfortunately, it cannot handle multiple diffusion orientations per voxel, which exist in high angular resolution diffusion imaging (HARDI) data. Such data is needed to resolve tracts in complex configurations, such as crossings. In this work, we suggest a visualization based on Fiber-Stippling but sensible to multiple diffusion orientations from HARDI-based diffusion models. With such a technique, it is now possible to visualize probabilistic tracts from HARDI-based tractography algorithms. This implies that tract crossings may now be visualized as crossing stipples, which is an essential step towards an accurate visualization of the neuroanatomy, as crossing tracts are widespread phenomena in the brain.

Despite the widely recognized importance of symmetric second order tensor fields in medicine and engineering, the visualization of data uncertainty in tensor fields is still in its infancy. A recently proposed tensorial normal distribution, involving a fourth order covariance tensor, provides a mathematical description of how different aspects of the tensor field, such as trace, anisotropy, or orientation, vary and covary at each point. However, this wealth of information is far too rich for a human analyst to take in at a single glance, and no suitable visualization tools are available. We propose a novel approach that facilitates visual analysis of tensor covariance at multiple levels of detail. We start with a visual abstraction that uses slice views and direct volume rendering to indicate large-scale changes in the covariance structure, and locations with high overall variance. We then provide tools for interactive exploration, making it possible to drill down into different types of variability, such as in shape or orientation. Finally, we allow the analyst to focus on specific locations of the field, and provide tensor glyph animations and overlays that intuitively depict confidence intervals at those points. Our system is demonstrated by investigating the effects of measurement noise on diffusion tensor MRI, and by analyzing two ensembles of stress tensor fields from solid mechanics.

Epidemiological studies comprise heterogeneous data about a subject group to define disease-specific risk factors. These data contain information (features) about a subject's lifestyle, medical status as well as medical image data. Statistical regression analysis is used to evaluate these features and to identify feature combinations indicating a disease (the target feature). We propose an analysis approach of epidemiological data sets by incorporating all features in an exhaustive regression-based analysis. This approach combines all independent features w.r.t. a target feature. It provides a visualization that reveals insights into the data by highlighting relationships. The 3D Regression Heat Map, a novel 3D visual encoding, acts as an overview of the whole data set. It shows all combinations of two to three independent features with a specific target disease. Slicing through the 3D Regression Heat Map allows for the detailed analysis of the underlying relationships. Expert knowledge about disease-specific hypotheses can be included into the analysis by adjusting the regression model formulas. Furthermore, the influences of features can be assessed using a difference view comparing different calculation results. We applied our 3D Regression Heat Map method to a hepatic steatosis data set to reproduce results from a data mining-driven analysis. A qualitative analysis was conducted on a breast density data set. We were able to derive new hypotheses about relations between breast density and breast lesions with breast cancer. With the 3D Regression Heat Map, we present a visual overview of epidemiological data that allows for the first time an interactive regression-based analysis of large feature sets with respect to a disease.

We present results from an experiment aimed at using logs of interactions with a visual analytics application to better understand how interactions lead to insight generation. We performed an insight-based user study of a visual analytics application and ran post hoc quantitative analyses of participants' measured insight metrics and interaction logs. The quantitative analyses identified features of interaction that were correlated with insight characteristics, and we confirmed these findings using a qualitative analysis of video captured during the user study. Results of the experiment include design guidelines for the visual analytics application aimed at supporting insight generation. Furthermore, we demonstrated an analysis method using interaction logs that identified which interaction patterns led to insights, going beyond insight-based evaluations that only quantify insight characteristics. We also discuss choices and pitfalls encountered when applying this analysis method, such as the benefits and costs of applying an abstraction framework to application-specific actions before further analysis. Our method can be applied to evaluations of other visualization tools to inform the design of insight-promoting interactions and to better understand analyst behaviors.

The VAST Challenge has been a popular venue for academic and industry participants for over ten years. Many participants comment that the majority of their time in preparing VAST Challenge entries is discovering elements in their software environments that need to be redesigned in order to solve the given task. Fortunately, there is no need to wait until the VAST Challenge is announced to test out software systems. The Visual Analytics Benchmark Repository contains all past VAST Challenge tasks, data, solutions and submissions. In this poster we describe how developers can perform informal evaluations of various aspects of their visual analytics environments using VAST Challenge information.

It is vital for the transportation industry, which performs most of its work by automobiles, to reduce its accident rate. This paper proposes a 3D visual interaction method for exploring caution areas from large-scale vehicle recorder data. Our method provides (i) a flexible filtering interface for driving operations such as braking or handling operations by various combinations of their attribute values such as velocity and acceleration, and (ii) a 3D visual environment for spatio-temporal exploration of caution areas. The proposed method was able to extract caution areas where some accidents have actually occurred or that are on very narrow roads with bad visibility by using real data given by one of the biggest transportation companies in Japan.

Although there has been a great deal of interest in analyzing customer opinions and breaking news in microblogs, progress has been hampered by the lack of an effective mechanism to discover and retrieve data of interest from microblogs. To address this problem, we have developed an uncertainty-aware visual analytics approach to retrieve salient posts, users, and hashtags. We extend an existing ranking technique to compute a multifaceted retrieval result: the mutual reinforcement rank of a graph node, the uncertainty of each rank, and the propagation of uncertainty among different graph nodes. To illustrate the three facets, we have also designed a composite visualization with three visual components: a graph visualization, an uncertainty glyph, and a flow map. The graph visualization with glyphs, the flow map, and the uncertainty analysis together enable analysts to effectively find the most uncertain results and interactively refine them. We have applied our approach to several Twitter datasets. Qualitative evaluation and two real-world case studies demonstrate the promise of our approach for retrieving high-quality microblog data.

Identifying coordinated relationships is an important task in data analytics. For example, an intelligence analyst might want to discover three suspicious people who all visited the same four cities. Existing techniques that display individual relationships, such as between lists of entities, require repetitious manual selection and significant mental aggregation in cluttered visualizations to find coordinated relationships. In this paper, we present BiSet, a visual analytics technique to support interactive exploration of coordinated relationships. In BiSet, we model coordinated relationships as biclusters and algorithmically mine them from a dataset. Then, we visualize the biclusters in context as bundled edges between sets of related entities. Thus, bundles enable analysts to infer task-oriented semantic insights about potentially coordinated activities. We make bundles as first class objects and add a new layer, ΓÇ£in-betweenΓÇ¥, to contain these bundle objects. Based on this, bundles serve to organize entities represented in lists and visually reveal their membership. Users can interact with edge bundles to organize related entities, and vice versa, for sensemaking purposes. With a usage scenario, we demonstrate how BiSet supports the exploration of coordinated relationships in text analytics.