IEEE VIS Publication Dataset

We explore the effects of selecting alternative layouts in hierarchical displays that show multiple aspects of large multivariate datasets, including spatial and temporal characteristics. Hierarchical displays of this type condition a dataset by multiple discrete variable values, creating nested graphical summaries of the resulting subsets in which size, shape and colour can be used to show subset properties. These 'small multiples' are ordered by the conditioning variable values and are laid out hierarchically using dimensional stacking. Crucially, we consider the use of different layouts at different hierarchical levels, so that the coordinates of the plane can be used more effectively to draw attention to trends and anomalies in the data. We argue that these layouts should be informed by the type of conditioning variable and by the research question being explored. We focus on space-filling rectangular layouts that provide data-dense and rich overviews of data to address research questions posed in our exploratory analysis of spatial and temporal aspects of property sales in London. We develop a notation ('HiVE') that describes visualisation and layout states and provides reconfiguration operators, demonstrate its use for reconfiguring layouts to pursue research questions and provide guidelines for this process. We demonstrate how layouts can be related through animated transitions to reduce the cognitive load associated with their reconfiguration whilst supporting the exploratory process.

Visual exploration of multidimensional data is a process of isolating and extracting relationships within and between dimensions. Coordinated multiple view approaches are particularly effective for visual exploration because they support precise expression of heterogeneous multidimensional queries using simple interactions. Recent visual analytics research has made significant progress in identifying and understanding patterns of composed views and coordinations that support fast, flexible, and open-ended data exploration. What is missing is formalization of the space of expressible queries in terms of visual representation and interaction. This paper introduces the conjunctive visual form model in which visual exploration consists of interactively-driven sequences of transitions between visual states that correspond to conjunctive normal forms in boolean logic. The model predicts several new and useful ways to extend the space of rapidly expressible queries through addition of simple interactive capabilities to existing compositional patterns. Two recent related visual tools offer a subset of these capabilities, providing a basis for conjecturing about such extensions.

A dendrogram that visualizes a clustering hierarchy is often integrated with a re-orderable matrix for pattern identification. The method is widely used in many research fields including biology, geography, statistics, and data mining. However, most dendrograms do not scale up well, particularly with respect to problems of graphical and cognitive information overload. This research proposes a strategy that links an overview dendrogram and a detail-view dendrogram, each integrated with a re-orderable matrix. The overview displays only a user-controlled, limited number of nodes that represent the ldquoskeletonrdquo of a hierarchy. The detail view displays the sub-tree represented by a selected meta-node in the overview. The research presented here focuses on constructing a concise overview dendrogram and its coordination with a detail view. The proposed method has the following benefits: dramatic alleviation of information overload, enhanced scalability and data abstraction quality on the dendrogram, and the support of data exploration at arbitrary levels of detail. The contribution of the paper includes a new metric to measure the ldquoimportancerdquo of nodes in a dendrogram; the method to construct the concise overview dendrogram from the dynamically-identified, important nodes; and measure for evaluating the data abstraction quality for dendrograms. We evaluate and compare the proposed method to some related existing methods, and demonstrating how the proposed method can help users find interesting patterns through a case study on county-level U.S. cervical cancer mortality and demographic data.

Finding suitable, less space consuming views for a document's main content is crucial to provide convenient access to large document collections on display devices of different size. We present a novel compact visualization which represents the document's key semantic as a mixture of images and important key terms, similar to cards in a top trumps game. The key terms are extracted using an advanced text mining approach based on a fully automatic document structure extraction. The images and their captions are extracted using a graphical heuristic and the captions are used for a semi-semantic image weighting. Furthermore, we use the image color histogram for classification and show at least one representative from each non-empty image class. The approach is demonstrated for the IEEE InfoVis publications of a complete year. The method can easily be applied to other publication collections and sets of documents which contain images.

With the rapid growth of the World Wide Web and electronic information services, text corpus is becoming available online at an incredible rate. By displaying text data in a logical layout (e.g., color graphs), text visualization presents a direct way to observe the documents as well as understand the relationship between them. In this paper, we propose a novel technique, Exemplar-based visualization (EV), to visualize an extremely large text corpus. Capitalizing on recent advances in matrix approximation and decomposition, EV presents a probabilistic multidimensional projection model in the low-rank text subspace with a sound objective function. The probability of each document proportion to the topics is obtained through iterative optimization and embedded to a low dimensional space using parameter embedding. By selecting the representative exemplars, we obtain a compact approximation of the data. This makes the visualization highly efficient and flexible. In addition, the selected exemplars neatly summarize the entire data set and greatly reduce the cognitive overload in the visualization, leading to an easier interpretation of large text corpus. Empirically, we demonstrate the superior performance of EV through extensive experiments performed on the publicly available text data sets.

Spatial interactions (or flows), such as population migration and disease spread, naturally form a weighted location-to-location network (graph). Such geographically embedded networks (graphs) are usually very large. For example, the county-to-county migration data in the U.S. has thousands of counties and about a million migration paths. Moreover, many variables are associated with each flow, such as the number of migrants for different age groups, income levels, and occupations. It is a challenging task to visualize such data and discover network structures, multivariate relations, and their geographic patterns simultaneously. This paper addresses these challenges by developing an integrated interactive visualization framework that consists three coupled components: (1) a spatially constrained graph partitioning method that can construct a hierarchy of geographical regions (communities), where there are more flows or connections within regions than across regions; (2) a multivariate clustering and visualization method to detect and present multivariate patterns in the aggregated region-to-region flows; and (3) a highly interactive flow mapping component to map both flow and multivariate patterns in the geographic space, at different hierarchical levels. The proposed approach can process relatively large data sets and effectively discover and visualize major flow structures and multivariate relations at the same time. User interactions are supported to facilitate the understanding of both an overview and detailed patterns.

When displaying thousands of aircraft trajectories on a screen, the visualization is spoiled by a tangle of trails. The visual analysis is therefore difficult, especially if a specific class of trajectories in an erroneous dataset has to be studied. We designed FromDaDy, a trajectory visualization tool that tackles the difficulties of exploring the visualization of multiple trails. This multidimensional data exploration is based on scatterplots, brushing, pick and drop, juxtaposed views and rapid visual design. Users can organize the workspace composed of multiple juxtaposed views. They can define the visual configuration of the views by connecting data dimensions from the dataset to Bertin's visual variables. They can then brush trajectories, and with a pick and drop operation they can spread the brushed information across views. They can then repeat these interactions, until they extract a set of relevant data, thus formulating complex queries. Through two real-world scenarios, we show how FromDaDy supports iterative queries and the extraction of trajectories in a dataset that contains up to 5 million data.

A widespread use of high-throughput gene expression analysis techniques enabled the biomedical research community to share a huge body of gene expression datasets in many public databases on the web. However, current gene expression data repositories provide static representations of the data and support limited interactions. This hinders biologists from effectively exploring shared gene expression datasets. Responding to the growing need for better interfaces to improve the utility of the public datasets, we have designed and developed a new web-based visual interface entitled GeneShelf (http://bioinformatics.cnmcresearch.org/GeneShelf). It builds upon a zoomable grid display to represent two categorical dimensions. It also incorporates an augmented timeline with expandable time points that better shows multiple data values for the focused time point by embedding bar charts. We applied GeneShelf to one of the largest microarray datasets generated to study the progression and recovery process of injuries at the spinal cord of mice and rats. We present a case study and a preliminary qualitative user study with biologists to show the utility and usability of GeneShelf.

We describe the design and deployment of Dashiki, a public Website where users may collaboratively build visualization dashboards through a combination of a wiki-like syntax and interactive editors. Our goals are to extend existing research on social data analysis into presentation and organization of data from multiple sources, explore new metaphors for these activities, and participate more fully in the Web's information ecology by providing tighter integration with real-time data. To support these goals, our design includes novel and low-barrier mechanisms for editing and layout of dashboard pages and visualizations, connection to data sources, and coordinating interaction between visualizations. In addition to describing these technologies, we provide a preliminary report on the public launch of a prototype based on this design, including a description of the activities of our users derived from observation and interviews.

We present a novel and extensible set of interaction techniques for manipulating visualizations of networks by selecting subgraphs and then applying various commands to modify their layout or graphical properties. Our techniques integrate traditional rectangle and lasso selection, and also support selecting a node's neighbourhood by dragging out its radius (in edges) using a novel kind of radial menu. Commands for translation, rotation, scaling, or modifying graphical properties (such as opacity) and layout patterns can be performed by using a hotbox (a transiently popped-up, semi-transparent set of widgets) that has been extended in novel ways to integrate specification of commands with 1D or 2D arguments. Our techniques require only one mouse button and one keyboard key, and are designed for fast, gestural, in-place interaction. We present the design and integration of these interaction techniques, and illustrate their use in interactive graph visualization. Our techniques are implemented in NAViGaTOR, a software package for visualizing and analyzing biological networks. An initial usability study is also reported.

Multivariate data sets including hundreds of variables are increasingly common in many application areas. Most multivariate visualization techniques are unable to display such data effectively, and a common approach is to employ dimensionality reduction prior to visualization. Most existing dimensionality reduction systems focus on preserving one or a few significant structures in data. For many analysis tasks, however, several types of structures can be of high significance and the importance of a certain structure compared to the importance of another is often task-dependent. This paper introduces a system for dimensionality reduction by combining user-defined quality metrics using weight functions to preserve as many important structures as possible. The system aims at effective visualization and exploration of structures within large multivariate data sets and provides enhancement of diverse structures by supplying a range of automatic variable orderings. Furthermore it enables a quality-guided reduction of variables through an interactive display facilitating investigation of trade-offs between loss of structure and the number of variables to keep. The generality and interactivity of the system is demonstrated through a case scenario.

Large multi-touch displays are expanding the possibilities of multiple-coordinated views by allowing multiple people to interact with data in concert or independently. We present Lark, a system that facilitates the coordination of interactions with information visualizations on shared digital workspaces. We focus on supporting this coordination according to four main criteria: scoped interaction, temporal flexibility, spatial flexibility, and changing collaboration styles. These are achieved by integrating a representation of the information visualization pipeline into the shared workspace, thus explicitly indicating coordination points on data, representation, presentation, and view levels. This integrated meta-visualization supports both the awareness of how views are linked and the freedom to work in concert or independently. Lark incorporates these four main criteria into a coherent visualization collaboration interaction environment by providing direct visual and algorithmic support for the coordination of data analysis actions over shared large displays.

We present a new technique, the phrase net, for generating visual overviews of unstructured text. A phrase net displays a graph whose nodes are words and whose edges indicate that two words are linked by a user-specified relation. These relations may be defined either at the syntactic or lexical level; different relations often produce very different perspectives on the same text. Taken together, these perspectives often provide an illuminating visual overview of the key concepts and relations in a document or set of documents.

In the field of comparative genomics, scientists seek to answer questions about evolution and genomic function by comparing the genomes of species to find regions of shared sequences. Conserve dsyntenic blocks are an important biological data abstraction for indicating regions of shared sequences. The goal of this work is to show multiple types of relationships at multiple scales in a way that is visually comprehensible in accordance with known perceptual principles. We present a task analysis for this domain where the fundamental questions asked by biologists can be understood by a characterization of relationships into the four types of proximity/location, size, orientation, and similarity/strength, and the four scales of genome, chromosome, block, and genomic feature. We also propose a new taxonomy of the design space for visually encoding conservation data. We present MizBee, a multiscale synteny browser with the unique property of providing interactive side-by-side views of the data across the range of scales supporting exploration of all of these relationship types. We conclude with case studies from two biologists who used MizBee to augment their previous automatic analysis work flow, providing anecdotal evidence about the efficacy of the system for the visualization of syntenic data, the analysis of conservation relationships, and the communication of scientific insights.

We discuss the design and usage of ldquoWordle,rdquo a Web-based tool for visualizing text. Wordle creates tag-cloud-like displays that give careful attention to typography, color, and composition. We describe the algorithms used to balance various aesthetic criteria and create the distinctive Wordle layouts. We then present the results of a study of Wordle usage, based both on spontaneous behaviour observed in the wild, and on a large-scale survey of Wordle users. The results suggest that Wordles have become a kind of medium of expression, and that a ldquoparticipatory culturerdquo has arisen around them.

Despite myriad tools for visualizing data, there remains a gap between the notational efficiency of high-level visualization systems and the expressiveness and accessibility of low-level graphical systems. Powerful visualization systems may be inflexible or impose abstractions foreign to visual thinking, while graphical systems such as rendering APIs and vector-based drawing programs are tedious for complex work. We argue that an easy-to-use graphical system tailored for visualization is needed. In response, we contribute Protovis, an extensible toolkit for constructing visualizations by composing simple graphical primitives. In Protovis, designers specify visualizations as a hierarchy of marks with visual properties defined as functions of data. This representation achieves a level of expressiveness comparable to low-level graphics systems, while improving efficiency - the effort required to specify a visualization - and accessibility - the effort required to learn and modify the representation. We substantiate this claim through a diverse collection of examples and comparative analysis with popular visualization tools.

Hierarchical representations are common in digital repositories, yet are not always fully leveraged in their online search interfaces. This work describes ResultMaps, which use hierarchical treemap representations with query string-driven digital library search engines. We describe two lab experiments, which find that ResultsMap users yield significantly better results over a control condition on some subjective measures, and we find evidence that ResultMaps have ancillary benefits via increased understanding of some aspects of repository content. The ResultMap system and experiments contribute an understanding of the benefits-direct and indirect-of the ResultMap approach to repository search visualization.

In this paper, we present a novel parallel coordinates design integrated with points (scattering points in parallel coordinates, SPPC), by taking advantage of both parallel coordinates and scatterplots. Different from most multiple views visualization frameworks involving parallel coordinates where each visualization type occupies an individual window, we convert two selected neighboring coordinate axes into a scatterplot directly. Multidimensional scaling is adopted to allow converting multiple axes into a single subplot. The transition between two visual types is designed in a seamless way. In our work, a series of interaction tools has been developed. Uniform brushing functionality is implemented to allow the user to perform data selection on both points and parallel coordinate polylines without explicitly switching tools. A GPU accelerated dimensional incremental multidimensional scaling (DIMDS) has been developed to significantly improve the system performance. Our case study shows that our scheme is more efficient than traditional multi-view methods in performing visual analysis tasks.

We present a case study of our experience designing SellTrend, a visualization system for analyzing airline travel purchase requests. The relevant transaction data can be characterized as multi-variate temporal and categorical event sequences, and the chief problem addressed is how to help company analysts identify complex combinations of transaction attributes that contribute to failed purchase requests. SellTrend combines a diverse set of techniques ranging from time series visualization to faceted browsing and historical trend analysis in order to help analysts make sense of the data. We believe that the combination of views and interaction capabilities in SellTrend provides an innovative approach to this problem and to other similar types of multivariate, temporally driven transaction data analysis. Initial feedback from company analysts confirms the utility and benefits of the system.

In this paper, we present a new visual way of exploring state sequences in large observational time-series. A key advantage of our method is that it can directly visualize higher-order state transitions. A standard first order state transition is a sequence of two states that are linked by a transition. A higher-order state transition is a sequence of three or more states where the sequence of participating states are linked together by consecutive first order state transitions. Our method extends the current state-graph exploration methods by employing a two dimensional graph, in which higher-order state transitions are visualized as curved lines. All transitions are bundled into thick splines, so that the thickness of an edge represents the frequency of instances. The bundling between two states takes into account the state transitions before and after the transition. This is done in such a way that it forms a continuous representation in which any subsequence of the timeseries is represented by a continuous smooth line. The edge bundles in these graphs can be explored interactively through our incremental selection algorithm. We demonstrate our method with an application in exploring labeled time-series data from a biological survey, where a clustering has assigned a single label to the data at each time-point. In these sequences, a large number of cyclic patterns occur, which in turn are linked to specific activities. We demonstrate how our method helps to find these cycles, and how the interactive selection process helps to find and investigate activities.