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Laboratoire de Recherche en Informatique - Bioinformatics Group

Sabine PERES

Sabine PERES
Personnal informations
E-mailsabine [.] peres [@] lri [.] fr
Home pagehttp://www.lri.fr/~speres/
PositionAssociate professor, Ph.D. in bioinformatics
Phone+(33)1 69 15 64 71
Fax+(33)1.69.15.65.86
Office174
AdressLaboratoire de Recherche en Informatique (LRI)
Bât 650 Université Paris-Sud 11 91405 Orsay Cedex France.
version francaise
Teaching

EFM analysis

Publications

2018
[29] Identifying Biomarkers of Wharton's Jelly Mesenchymal Stromal Cells Using a Dynamic Metabolic Model: The Cell Passage Effect (Laflaquière B., Leclercq G. , Choey C., Chen J. , Peres S. , Ito C., Jolicoeur M.) In Metabolites, volume 8, 2018. [bib]
[28] Thermodynamic constraints for identifying the elementary flux modes (Peres S., Schuster S., Dague P.) In Biochemical Society Transactions, volume in press, 2018. [bib]
2017
[27] A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by it Clostridium acetobutylicum ATCC 824 with riboflavin as a by-product. (X. Zhao M. Kasbi J. Chen S. Peres M. Jolicoeur.) In Biotechnology \& Bioengineering, volume missing volume, 2017. [bib]
[26] How important is thermodynamics for identifying elementary flux modes ? (Peres S., Jolicoeur M., Moulin C., Dague P., Schuster S.) In Plos one, volume 12, 2017. [bib]
[25] HSM a reduced model of Central Carbon Metabolism: a dynamical approach (Beauvoit B., Colombie S., Issa R., Mazat J-P., Nazaret C. , Peres S.) In advances in Systems and Synthetic Biology, 2017. [bib]
2016
[24] The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect (da Veiga Moreira J., Hamraz M., Abolhassani M., Bigan E., Peres S., Paulevé L., Lévy M., Steyaert J-M. , Schwartz L.) In Metabolites, volume 6, 2016. [bib]
[23] Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells (Beauvoit B., Colombie S., Issa R., Mazat J-P., Nazaret C. , Peres S.) In advances in Systems and Synthetic Biology, 2016. [bib]
[22] Minimality of Metabolic Flux Modes under Boolean Regulation Constraints (Morterol M., Dague P., Peres S., Simon L.) In Proceedings of the 12th International Workshop on Constraint-Based Methods for Bioinformatics (WCB'16), 2016. [bib]
[21] Représentation systémique multi-échelle des processus biologiques de la bactérie (Henry V., Ferré A., Froidevaux C., Goelzer A., Fromion V., Cohen-Boulakia S., Dérozier S., Dinh M., Fiévet G., Fischer S., Gibrat J.-F., Loux V., Peres S.) In Journées francophones d'Ingénierie des Connaissances, 2016. [bib]
2015
[20] Cell Cycle Progression is Regulated by Intertwined Redox Oscillators (da Veiga Moreira J., Peres S., Steyaert J-M., Bigan E., Paulevé L., Lévy M., Schwartz L.) In Theoretical biology and medical modelling, volume 12, 2015. [bib]
2014
[19] SAT-Based Metabolics Pathways Analysis without Compilation (Peres S., Morterol M., Simon L.) In Lecture Note in Bioinformatics, 2014. [bib]
[18] Systematic study of a metabolic network (Beauvoit B., Colombie S., Mazat J.P. Nazaret C., Peres S.) In advances in Systems and Synthetic Biology, 2014. [bib]
2013
[17] Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation (Peres S., Felicori L., Molina F.) In Plos One, volume 8, 2013. [bib]
[16] Analysis of metabolic networks using elementary flux modes (Peres S.) In advances in Systems and Synthetic Biology, 2013. [bib]
2012
[15] Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism (Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.) In Science, volume 335, 2012. [bib]
2011
[14] Analysis of the variability of human normal urine by 2D-GE reveals a public and a private proteome (Molina L., Salvetat N., Ben Ameur R., Peres S., Sommerer N., Jarraya F., Ayadi H., Molina F., Granier C.) In Journal of proteomics, volume 75, 2011. [bib]
[13] ACoM: a classification method for elementary flux modes based on motif finding (Peres S., Vallée F., Beurton-Aimar M., Mazat J.P.) In Biosystems, volume 103, 2011. [bib]
2010
[12] Computing biological functions using BioPsi a formal description of biological processes based on elementary bricks of actions (Peres S., Felicori L., Rialle S., Jobard E., Molina F.) In Bioinformatics, volume 26, 2010. [bib]
[11] BioNetCAD: design simulation and experimental validation of synthetic biochemical networks (Rialle S., Felicori L., Dias-Lopes C., Peres S., El Atia S., Thierry AR., Amar P., Molina F.) In Bioinformatics, volume 26, 2010. [bib]
2008
[10] A new method for proteomics 2D gels spot alignment: application to large sample set analysis in clinical biology (Peres S., Molina L., Salvetat N., Granier C., Molina F.) In BMC Bioinformatics, volume 9, 2008. [bib]
2007
[9] Classification des modes élémentaires~: application au métabolisme énergétique mitochondrial (Peres S., Beurton-Aimar M., Mazat J.P.) In Technique et Science Informatiques, volume 26, 2007. [bib]
[8] SBGN: notation graphique des réseaux biochimiques (Molina F., Peres S.) In Biologie Systémique: standards et modèles. OmniScience, 2007. [bib]
[7] Structure et modélisation des réseaux métaboliques (Mazat J.P., Nazaret C., Peres S.) In Biofutur, volume 275, 2007. [bib]
2006
[6] Pathway classification of TCA cycle (Peres S., Beurton-Aimar M., Mazat J.P.) In IEE journal for Systems Biology, volume 153, 2006. [bib]
2005
[5] Role of mitochondrial network organization in the regulation of energy production in living human cells: A multi-approach study (Benard G., Parisey N., Lales C., Faustin B., Rocher C., Aleardi A. M., Pierron D., Peres S., Malgat M., Dacharry-Prigent J., Mazat J. P., Letellier T., Aimar-Beurton M., Rossignol R.) In 9th World Multi-Conference on Systemics Cybernetics and Informatics, 2005. [bib]