Laboratoire
de Recherche en Informatique - Équipe Bioinformatique
Publications
2009
Bastien Rance, Jean-François Gibrat, Christine Froidevaux
An adaptive combination of matchers: application to the mapping of biological ontologies for genome annotation
Data Integration in the Life Sciences, DILS 2009, LNCS Vol. 5647, 113-126.
2008
Jérôme Azé, Lucie Gentils, Claire Toffano-Nioche, Valentin Loux, Jean-François Gibrat, Philippe Bessières, Céline Rouveirol, Anne Poupon, Christine Froidevaux
Towards a semi-automatic functional annotation tool based on decision tree techniques
Extended version MLSB'07, BMC Proceedings, Vol.2 suppl.4, 2008.
Frédéric Lemoine, Bernard Labedan, Christine Froidevaux
GenoQuery: a new querying module for functional annotation in a genomic warehouse
Bioinformatics (ISMB 2008), Vol 24, n°13, i322-i329, 2008.
GenoQuery Site
Lucie Gentils, Jérôme Azé, Claire Toffano-Nioche, Valentin Loux, Anne Poupon, Jean-François Gibrat, Christine Froidevaux
Mesures Hiérarchiques pondérées pour l'évaluation d'un système semi-automatique d'annotation de génomes utilisant des arbres de décision,
8th Conference Extraction et Gestion des Connaissances, EGC 2008: 133-138.
Christine Froidevaux, Frédéric Lemoine
Requêtes alternatives dans le contexte d'un entrepôt de données génomiques
8th Conference Extraction et Gestion des Connaissances, EGC 2008: 61-72.
2007
Sarah Cohen-Boulakia, Olivier Biton, Susan Davidson, Christine Froidevaux
BioGuideSRS: Querying Multiple Sources with a user-centric perspective
Bioinformatics, 23(10), 1301-1303.
Christine Froidevaux, Frédérique Lisacek, Bastien Rance
Extracting Sequential Nuggets of Knowledge
In Proceedings of Database and Expert Systems Applications, DEXA'07, LNCS, Vol. 4653, 740-750, September 2007.
Christine Froidevaux, Frédérique Lisacek, Bastien Rance
Discovering relevant sequential associations between heterogeneous features of proteins
Data Integration in the Life Sciences, DILS'07, Philadelphia, Demo, June 2007.
2006
Sarah Cohen-Boulakia, Susan Davidson, Christine Froidevaux, Zoé Lacroix and Maria-Esther Vidal
Path-based systems to guide scientists in the maze of biological data sources
Journal of Bioinformatics and Computational Biology, Vol. 4, No. 5, 1069-1095.
Paper
Sarah Cohen Boulakia, Christine Froidevaux and Emmanuel Pietriga
Selecting biological data sources and tools with XPR, a path language for RDF
In Proc. of PSB'06 (Pacific Symposium on Biocomputing, January, Wailea).
Paper
BioGuide Site.
.
2005
Sarah Cohen Boulakia, Susan Davidson and Christine Froidevaux
A User-centric Framework for Accessing Biological Sources and Tools
In Proc. of DILS'05 (Data Integration in the Life Sciences), Springer-Verlag, Lecture Notes in BioInformatics (LNBI), Vol. 3615, 3-18.
Abstract
BioGuide Site.
2004
Sarah Cohen Boulakia, Séverine Lair, Nicolas Stransky, Sréphane Graziani, François Radvanyi, Emmanuel Barillot and Christine Froidevaux
Selecting biomedical data sources according to user preferences
In Proc. of the 12th International Conference on Intelligent Systems for Molecular Biology, ISMB/ECCB, Glasgow, Bioinformatics Vol 20 Suppl.1, 2004, i86-i93.
Géraldine Mercier, Nathalie Berthault, Jérémie Mary, Julie Peyre, A. Antoniadis, Jean-Paul Comet, Antoine Cornuéjols, Christine Froidevaux and Marie Dutreix
Biological detection of low radiation by combining results of two microarray analysis methods
Nucleic Acids Research, Vol 32 (1), e12, 2004.
Alain Bidault, Sarah Cohen Boulakia and Christine Froidevaux
Preferences for Queries in a Mediator Approach
In Proc. of the European Conference on Artificial Intelligence, ECAI-2004, Valencia, short paper.
Marie Dutreix, Jean-Paul Comet, Antoine Cornuéjols and Christine Froidevaux
Determination of cellular drug targets: searching for functional information in the jungle of microarrays data
In Proc. of the Conf. "Current trends in drug discovery research" (CTDDR-2004), India, Feb. 17-20, 2004.
Abergel D., Cohen Boulakia S., Lemoine F., Froidevaux Ch.,Termier M.,
WInGS:A reliability controlled data warehouse for yeast
In Proc. of Journées Ouvertes, Biologie, Informatique et Mathématiques (JOBIM), 2004 (short paper), Montréal.
2003
Mickaël Bekaert, Laure Bidou, Alain Denise, Guillemette Duchateau-Nguyen, Jean-Paul Forest, Christine Froidevaux, Isabelle Hatin,
Jean-Pierre Rousset and Michel Termier
Towards a computational model for -1 eukaryotic frameshifting sites
Bioinformatics, Vol 19, 2003, 327-335.
Mickaël Bekaert, Jean-Paul Forest, Laure Bidou, Alain Denise, Guillemette Duchateau-Nguyen, Céline Fabret, Christine Froidevaux, Isabelle Hatin,
Jean-Pierre Rousset and Michel Termier
Searching the Saccharomyces cerevisiae genome for -1 frameshifting sites
In Proc. of ECCB'03, European Conference on Computational Biology, September 27-30, Paris, 4-6, 2003.
Also presented at the Yeast Meeting, Göteborg, July, 2003.
Jérémie Mary, Géraldine Mercier, Jean-Paul Comet, Antoine Cornuéjols, Christine Froidevaux and Marie Dutreix
An attribute estimation technique for the analysis of microarray data
In Proc. of the Dieppe Spring school on Modelling and simulation of biological processes in the context of genomics (eds. P. Amar, F. Képès, V. Norris and P. Tracqui) Publisher Frontier group, ISBN : 2 91 4601 09 3, 2003, 69-77.
2002
Sarah Cohen Boulakia, Christine Froidevaux, Emmanuel Waller et Bernard Labedan
Genopage : A database of all protein modules encoded by completely sequenced genomes
In Proc. of Journées Ouvertes, Biologie, Informatique et Mathématiques (JOBIM), 2002, Saint-Malo, 2002, 187-193.
Paper.
Alain Bidault, Christine Froidevaux and Brigitte Safar
Similarity Between Queries in a Mediator
In Proc. of the 15th European Conference on Artificial Intelligence,
ECAI 2002, Lyon, 235-239.
Abstract and Bibtex
Paper
2000
Alain Bidault, Christine Froidevaux and Brigitte Safar,
Finding Successful Queries in a Mediator Context
In Proc. of the 4th International Conference on Flexible Query Answering Systems
FQAS-2000,
2000, 42-53.
Abstract and Bibtex
Alain Bidault, Christine Froidevaux and Brigitte Safar,
Repairing Queries in a Mediator Approach,
In Proc. of the 14th European Conference on Artificial Intelligence,
ECAI-2000, 2000, Berlin, 406-410.
Abstract and
Bibtex Paper
copyright Werner Horn
Main publications between 1990 and 2000
Philippe Chatalic, Christine Froidevaux and Camilla Schwind,
Graded Hypothesis Theories,
Theoretical Computer Science, 1997, Vol.171, 247-270.
Nicole Bidoit, Serena Cerrito and Christine Froidevaux,
A Linear Logic Approach to Consistency Preserving Updates,
Journal of Logic and Computation, 1996, Vol. 6, n°7, 1-27.
Christine Froidevaux and Jerôme Mengin
Default Logics : A Unified View,
Computational Intelligence, 1994, Vol. 10, n°3, 331-369.
LEA SOMBE, alias Ph. Besnard, L. Cholvy, M-O. Cordier, D. Dubois, L. Farinas del Cerro,
Ch. Froidevaux, F. Levy, Y. Moinard, H. Prade, C. Schwind and P. Siegel
Revision and Updating in Knowledge Bases,
International Journal of Intelligent Systems, 1994, Vol. 9, n°1.
Nicole Bidoit and Christine Froidevaux
General Logical Databases and Programs : Default Logic Semantics
and Stratification,
Information and Computation, 1991, Vol. 91, 1, 15-54.
Nicole Bidoit and Christine Froidevaux
Negation by default and unstratifiable logic programs,
Theoretical Computer Science, 1991, Vol. 78, 85-112.
Ph. Besnard, G. Brewka, Ch. Froidevaux,
E. Grégoire, and P. Siegel,
Non-Monotonicity,
in Special Issue of Journal of Applied Non-classical Logics on
"Conditionals, Uncertainty and Non-Monotonicity",
(M. Clarke, Ch. Froidevaux, E. Grégoire and Ph. Smets eds.),
1991.
LEA SOMBE, alias Ph. Besnard, L. Cholvy, M-O. Cordier, D. Dubois, L. Farinas del Cerro,
Ch. Froidevaux, Y. Moinard, H. Prade, C. Schwind and P. Siegel
Reasoning under Incomplete Information in Artificial Intelligence,
livre édité chez John Wiley, New York, 1990.
Christine Froidevaux, Marie-Claude Gaudel et Michèle Soria
Types de données et algorithmes,
McGraw-Hill, Collection Informatique,1990, 575 pages.
