Next: About this document ...
Up: GenRGenS v2.0 User Manual
Previous: The MASTER package :
Contents
- 1
-
Rambaut A. and Grassly N. C.
Seq-gen: An application for the monte carlo simulation of dna
sequence evolution along phylogenetic trees.
Journal of Computational Biology, (13):235-238, 1997.
- 2
-
A. Bairoch.
The PROSITE dictionary of sites and patterns in proteins, its
current status.
Nucleic Acids Research, 13(21):3097-3103, 1993.
- 3
-
B.A. Butler.
Sequence analysis using gcg.
Methods Biochem. Anal., (39):74-97, 1998.
- 4
-
E. Coward.
Shufflet: Shuffling sequences while conserving the
-let counts.
Bioinformatics, (15):1058-1059, 1999.
- 5
-
A. Denise, O. Roques, and M. Termier.
Random generation of words of context-free languages according to the
frequencies of letters.
In D. Gardy and A. Mokkadem, editors, Mathematics and Computer
Science: Algorithms, Trees, Combinatorics and probabilities, Trends in
Mathematics, pages 113-125. Birkhaüser, 2000.
- 6
-
R. Durbin, S. R. Eddy, A. Krogh, and G. Mitchison.
Biological Sequence Analysis : Probabilistic Models of Proteins
and Nucleic Acids.
Cambridge University Press, July 1999.
- 7
-
Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., and Bairoch A.
Expasy: the proteomics server for in-depth protein knowledge and
analysis.
Nucleic Acids Res., (31):3784-3788, 2003.
- 8
-
P. Flajolet, P. Zimmermann, and B. Van Cutsem.
A calculus for the random generation of labelled combinatorial
structures.
Theoretical Computer Science, 132:1-35, 1994.
A preliminary version is available in INRIA Research Report RR-1830.
- 9
-
Reinert G., Schbath S., and Waterman M.S.
Probabilistic and statistical properties of words: An overview.
Journal of Computational Biology, 1-2(7):1-46, 2000.
- 10
-
M. Nebel.
Combinatorial properties of rna secondary structures.
Journal of Computational Biology, 3(9):541-574, 2003.
- 11
-
Y. Ponty.
Etudes combinatoire et génération aléatoire des structures
secondaires d'ARN.
Master's thesis, Université Paris Sud, 2003.
Mémoire de DEA.
- 12
-
D.B. Searls.
Formal language theory and biological macromolecules.
Series in Discrete Mathematics and Theoretical Computer
Science, 47:117-140, 1999.
Yann Ponty
2007-04-19