ma bouille

Stéphanie Chevalier

PhD student in bioinformatics
in BioInfo @ LRI université Paris-Saclay and U900 @ curie

  • @ : stephanie.chevalier at lri.fr
  • ✉ : office 176, LRI - Bât 650 Ada Lovelace,
    Université Paris-Sud, 91405 Orsay Cedex, France

PhD student in systems biology

, since October, 2018
Topic:

Automatically design Boolean networks from static and dynamical knowledge on a biological system, to model processes such as cell differentiation.


Supervisors : Christine Froidevaux (LRI), Loïc Paulevé (LaBRI) and Andrei Zinovyev (Institut Curie)

Publications

  • conference (PDF)
    Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision.
    Stéphanie Chevalier*, Vincent Noël*, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé
    18th International Conference on Computational Methods in Systems Biology (CMSB), 2020
  • conference (PDF|Bibtex) DOI: 10.1109/ICTAI.2019.00014
    Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming.
    Stéphanie Chevalier, Christine Froidevaux, Loïc Paulevé, and Andrei Zinovyev
    31st International Conference on Tools with Artificial Intelligence (ICTAI), IEEE, 2019

Presentations

Posters

Research experience before PhD

  • Systems biology: 6mos. internship @ LRI, Paris-Saclay university - supervised by Loïc Paulevé

    « Logical approach for identifying Boolean networks from CRISPR-Cas9 mutation data »

  • Structural bioinformatics: 3mos. internship @ LIRIC, Lille Faculty of Pharmacie - supervised by Nicolas Renault

    « Structure-function relationship of the P2X7 channel-receptor, by open and closed states modeling, virtual screening and molecular metadynamics »

  • NGS analysis: 1,5mo. internship @ institut Pasteur, Lille - supervised by Julie Chevalier

    « RNA-seq expression data analysis, and adaptation of tools to the Galaxy environment to set up a workflow »

  • Databases: 1mo. internship @ MTi, Paris Diderot university - supervised by Karine Audouze

    « Creation of a biological database to link (in human) genes with diseases, metabolic pathways and proteins, gathering publicly available data »

Diplomas

  • 2018 : Master's degree in Bioinformatics , Université Paris Sud - Paris Saclay
  • 2015 : Bachelor's degree in Bioinformatics , Université Paris Diderot - Paris 7

Activities about bioinformatics

  • Junior Conference on Data Science and Engineering, Paris-Saclay university :
    member of the junior organizers committee for 2017 and 2018
  • "Fête de la Science du LRI" :
    preparation and organization of a bioinformatics workshop (Sept 2017 & Sept 2018),
    on the initiative of Christine Froidevaux (Professor, LRI) and co-facilitated with Pierre Andrieu (PhD student, LRI).
  • JeBiF - RSG France ("Jeunes Bioinformaticiens de France") :
    member (since 2014) and vice-chairwoman (July 2017 - July 2018)
  • Computer science intiation for pupils in primary school :
    preparation and organization of the initiation (8 workshops, in May 2017),
    co-facilitated by Julien Fumey and Florence Jornod (members of JeBiF)