PhD student in systems biology
, since October, 2018Topic:
Automatically design Boolean networks from static and dynamical knowledge on a biological system, to model processes such as cell differentiation.
Supervisors : Christine Froidevaux (LRI), Loïc Paulevé (LaBRI) and Andrei Zinovyev (Institut Curie)
Publications
- conference (PDF|Bibtex) DOI: 10.1007/978-3-030-60327-4_11 Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision. Stéphanie Chevalier*, Vincent Noël*, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé 18th International Conference on Computational Methods in Systems Biology (CMSB), 2020
- conference (PDF|Bibtex) DOI: 10.1109/ICTAI.2019.00014 Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming. Stéphanie Chevalier, Christine Froidevaux, Loïc Paulevé, and Andrei Zinovyev 31st International Conference on Tools with Artificial Intelligence (ICTAI), IEEE, 2019
Presentations
- GT Bioss: monthly virtual seminar - 2021/03
- SinCellMod-2020: Single cell data in network modeling - 2020/12
- Research school "Networks and Molecular Biology" - 2020/03 @ CIRM, Marseille
- GT TheoBioR: journée Métabolisme et méthodes hybrides - 2019/12 @ LRI
- ICTAI conference - 2019/11
- GT Bioss: annual days - 2018/07
Posters
- ECCB/ISMB 2019
- 1st course on Computational Systems Biology of Cancer - 2018 @ institut Curie
- Junior Conference on Data Science 2018 @ Paris-Saclay university
- JOBIM 2018
Research experience before PhD
- Systems biology: 6mos. internship @ LRI, Paris-Saclay university - supervised by Loïc Paulevé
« Logical approach for identifying Boolean networks from CRISPR-Cas9 mutation data »
- Structural bioinformatics: 3mos. internship @ LIRIC, Lille Faculty of Pharmacie - supervised by Nicolas Renault
« Structure-function relationship of the P2X7 channel-receptor, by open and closed states modeling, virtual screening and molecular metadynamics »
- NGS analysis: 1,5mo. internship @ institut Pasteur, Lille - supervised by Julie Chevalier
« RNA-seq expression data analysis, and adaptation of tools to the Galaxy environment to set up a workflow »
- Databases: 1mo. internship @ MTi, Paris Diderot university - supervised by Karine Audouze
« Creation of a biological database to link (in human) genes with diseases, metabolic pathways and proteins, gathering publicly available data »
Diplomas
- 2018 : Master's degree in Bioinformatics , Université Paris Sud - Paris Saclay
- 2015 : Bachelor's degree in Bioinformatics , Université Paris Diderot - Paris 7
Activities about bioinformatics
- Junior Conference on Data Science and Engineering, Paris-Saclay university :
member of the junior organizers committee for 2017 and 2018 - "Fête de la Science du LRI" :
preparation and organization of a bioinformatics workshop (Sept 2017 & Sept 2018),
on the initiative of Christine Froidevaux (Professor, LRI) and co-facilitated with Pierre Andrieu (PhD student, LRI). - JeBiF - RSG France ("Jeunes Bioinformaticiens de France") :
member (since 2014) and vice-chairwoman (July 2017 - July 2018) - Computer science intiation for pupils in primary school :
preparation and organization of the initiation (8 workshops, in May 2017),
co-facilitated by Julien Fumey and Florence Jornod (members of JeBiF)